CyberinfraV1, Main, Exploration, bibRecord, 000197

Microspatial gene expression patterns in the Amazon River Plume

Identifieur interne : 000197 ( Main/Exploration ); précédent : 000196; suivant : 000198

Microspatial gene expression patterns in the Amazon River Plume

Auteurs : Brandon M. Satinsky ; Byron C. Crump ; Christa B. Smith ; Shalabh Sharma ; Brian L. Zielinski ; Mary Doherty [États-Unis] ; Jun Meng ; Shulei Sun ; Patricia M. Medeiros ; John H. Paul ; Victoria J. Coles [États-Unis] ; Patricia L. Yager ; Mary Ann Moran

Source :

Proceedings of the National Academy of Sciences of the United States of America [ 0027-8424 ] ; 2014.

RBID : PMC:4121788

Abstract

Significance

The microbial community of the Amazon River Plume determines the fate of the world’s largest input of terrestrial carbon and nutrients to the ocean. By benchmarking with internal standards during sample collection, we determined that each liter of plume seawater contains 1 trillion genes and 50 billion transcripts from thousands of bacterial, archaeal, and eukaryotic taxa. Gene regulation by taxa inhabiting distinct microenvironments provides insights into micron-scale patterns of transformations in the marine carbon, nitrogen, phosphorus, and sulfur cycles in this globally important ecosystem.

Url:

http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4121788

DOI: 10.1073/pnas.1402782111
PubMed: 25024226
PubMed Central: 4121788

Affiliations:

Le document en format XML

<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">Microspatial gene expression patterns in the Amazon River Plume</title>
<author><name sortKey="Satinsky, Brandon M" sort="Satinsky, Brandon M" uniqKey="Satinsky B" first="Brandon M." last="Satinsky">Brandon M. Satinsky</name>
<affiliation><nlm:aff id="aff1"></nlm:aff>
</affiliation>
</author>
<author><name sortKey="Crump, Byron C" sort="Crump, Byron C" uniqKey="Crump B" first="Byron C." last="Crump">Byron C. Crump</name>
<affiliation><nlm:aff id="aff3">College of Earth, Ocean, and Atmospheric Science,<institution>Oregon State University</institution>
, Corvallis,<addr-line>OR</addr-line>
 97331;</nlm:aff>
</affiliation>
</author>
<author><name sortKey="Smith, Christa B" sort="Smith, Christa B" uniqKey="Smith C" first="Christa B." last="Smith">Christa B. Smith</name>
<affiliation><nlm:aff id="aff2">Marine Sciences,<institution>University of Georgia</institution>
, Athens,<addr-line>GA</addr-line>
 30602;</nlm:aff>
</affiliation>
</author>
<author><name sortKey="Sharma, Shalabh" sort="Sharma, Shalabh" uniqKey="Sharma S" first="Shalabh" last="Sharma">Shalabh Sharma</name>
<affiliation><nlm:aff id="aff2">Marine Sciences,<institution>University of Georgia</institution>
, Athens,<addr-line>GA</addr-line>
 30602;</nlm:aff>
</affiliation>
</author>
<author><name sortKey="Zielinski, Brian L" sort="Zielinski, Brian L" uniqKey="Zielinski B" first="Brian L." last="Zielinski">Brian L. Zielinski</name>
<affiliation><nlm:aff id="aff4">College of Marine Science,<institution>University of South Florida</institution>
, St. Petersburg,<addr-line>FL</addr-line>
 33701;</nlm:aff>
</affiliation>
</author>
<author><name sortKey="Doherty, Mary" sort="Doherty, Mary" uniqKey="Doherty M" first="Mary" last="Doherty">Mary Doherty</name>
<affiliation wicri:level="2"><nlm:aff wicri:cut="; and" id="aff5">Horn Point Laboratory,<institution>University of Maryland Center for Environmental Science</institution>
, Cambridge, MD 21613</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<placeName><region type="state">Maryland</region>
</placeName>
<wicri:cityArea>, Cambridge</wicri:cityArea>
</affiliation>
</author>
<author><name sortKey="Meng, Jun" sort="Meng, Jun" uniqKey="Meng J" first="Jun" last="Meng">Jun Meng</name>
<affiliation><nlm:aff id="aff2">Marine Sciences,<institution>University of Georgia</institution>
, Athens,<addr-line>GA</addr-line>
 30602;</nlm:aff>
</affiliation>
</author>
<author><name sortKey="Sun, Shulei" sort="Sun, Shulei" uniqKey="Sun S" first="Shulei" last="Sun">Shulei Sun</name>
<affiliation><nlm:aff id="aff6">Center for Research in Biological Systems,<institution>University of California, San Diego</institution>
, La Jolla,<addr-line>CA</addr-line>
 92093</nlm:aff>
</affiliation>
</author>
<author><name sortKey="Medeiros, Patricia M" sort="Medeiros, Patricia M" uniqKey="Medeiros P" first="Patricia M." last="Medeiros">Patricia M. Medeiros</name>
<affiliation><nlm:aff id="aff2">Marine Sciences,<institution>University of Georgia</institution>
, Athens,<addr-line>GA</addr-line>
 30602;</nlm:aff>
</affiliation>
</author>
<author><name sortKey="Paul, John H" sort="Paul, John H" uniqKey="Paul J" first="John H." last="Paul">John H. Paul</name>
<affiliation><nlm:aff id="aff4">College of Marine Science,<institution>University of South Florida</institution>
, St. Petersburg,<addr-line>FL</addr-line>
 33701;</nlm:aff>
</affiliation>
</author>
<author><name sortKey="Coles, Victoria J" sort="Coles, Victoria J" uniqKey="Coles V" first="Victoria J." last="Coles">Victoria J. Coles</name>
<affiliation wicri:level="2"><nlm:aff wicri:cut="; and" id="aff5">Horn Point Laboratory,<institution>University of Maryland Center for Environmental Science</institution>
, Cambridge, MD 21613</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<placeName><region type="state">Maryland</region>
</placeName>
<wicri:cityArea>, Cambridge</wicri:cityArea>
</affiliation>
</author>
<author><name sortKey="Yager, Patricia L" sort="Yager, Patricia L" uniqKey="Yager P" first="Patricia L." last="Yager">Patricia L. Yager</name>
<affiliation><nlm:aff id="aff2">Marine Sciences,<institution>University of Georgia</institution>
, Athens,<addr-line>GA</addr-line>
 30602;</nlm:aff>
</affiliation>
</author>
<author><name sortKey="Moran, Mary Ann" sort="Moran, Mary Ann" uniqKey="Moran M" first="Mary Ann" last="Moran">Mary Ann Moran</name>
<affiliation><nlm:aff id="aff2">Marine Sciences,<institution>University of Georgia</institution>
, Athens,<addr-line>GA</addr-line>
 30602;</nlm:aff>
</affiliation>
</author>
</titleStmt>
<publicationStmt><idno type="wicri:source">PMC</idno>
<idno type="pmid">25024226</idno>
<idno type="pmc">4121788</idno>
<idno type="url">http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4121788</idno>
<idno type="RBID">PMC:4121788</idno>
<idno type="doi">10.1073/pnas.1402782111</idno>
<date when="2014">2014</date>
<idno type="wicri:Area/Pmc/Corpus">000410</idno>
<idno type="wicri:Area/Pmc/Curation">000410</idno>
<idno type="wicri:Area/Pmc/Checkpoint">000185</idno>
<idno type="wicri:Area/Ncbi/Merge">000546</idno>
<idno type="wicri:Area/Ncbi/Curation">000546</idno>
<idno type="wicri:Area/Ncbi/Checkpoint">000546</idno>
<idno type="wicri:doubleKey">0027-8424:2014:Satinsky B:microspatial:gene:expression</idno>
<idno type="wicri:Area/Main/Merge">000197</idno>
<idno type="wicri:Area/Main/Curation">000197</idno>
<idno type="wicri:Area/Main/Exploration">000197</idno>
</publicationStmt>
<sourceDesc><biblStruct><analytic><title xml:lang="en" level="a" type="main">Microspatial gene expression patterns in the Amazon River Plume</title>
<author><name sortKey="Satinsky, Brandon M" sort="Satinsky, Brandon M" uniqKey="Satinsky B" first="Brandon M." last="Satinsky">Brandon M. Satinsky</name>
<affiliation><nlm:aff id="aff1"></nlm:aff>
</affiliation>
</author>
<author><name sortKey="Crump, Byron C" sort="Crump, Byron C" uniqKey="Crump B" first="Byron C." last="Crump">Byron C. Crump</name>
<affiliation><nlm:aff id="aff3">College of Earth, Ocean, and Atmospheric Science,<institution>Oregon State University</institution>
, Corvallis,<addr-line>OR</addr-line>
 97331;</nlm:aff>
</affiliation>
</author>
<author><name sortKey="Smith, Christa B" sort="Smith, Christa B" uniqKey="Smith C" first="Christa B." last="Smith">Christa B. Smith</name>
<affiliation><nlm:aff id="aff2">Marine Sciences,<institution>University of Georgia</institution>
, Athens,<addr-line>GA</addr-line>
 30602;</nlm:aff>
</affiliation>
</author>
<author><name sortKey="Sharma, Shalabh" sort="Sharma, Shalabh" uniqKey="Sharma S" first="Shalabh" last="Sharma">Shalabh Sharma</name>
<affiliation><nlm:aff id="aff2">Marine Sciences,<institution>University of Georgia</institution>
, Athens,<addr-line>GA</addr-line>
 30602;</nlm:aff>
</affiliation>
</author>
<author><name sortKey="Zielinski, Brian L" sort="Zielinski, Brian L" uniqKey="Zielinski B" first="Brian L." last="Zielinski">Brian L. Zielinski</name>
<affiliation><nlm:aff id="aff4">College of Marine Science,<institution>University of South Florida</institution>
, St. Petersburg,<addr-line>FL</addr-line>
 33701;</nlm:aff>
</affiliation>
</author>
<author><name sortKey="Doherty, Mary" sort="Doherty, Mary" uniqKey="Doherty M" first="Mary" last="Doherty">Mary Doherty</name>
<affiliation wicri:level="2"><nlm:aff wicri:cut="; and" id="aff5">Horn Point Laboratory,<institution>University of Maryland Center for Environmental Science</institution>
, Cambridge, MD 21613</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<placeName><region type="state">Maryland</region>
</placeName>
<wicri:cityArea>, Cambridge</wicri:cityArea>
</affiliation>
</author>
<author><name sortKey="Meng, Jun" sort="Meng, Jun" uniqKey="Meng J" first="Jun" last="Meng">Jun Meng</name>
<affiliation><nlm:aff id="aff2">Marine Sciences,<institution>University of Georgia</institution>
, Athens,<addr-line>GA</addr-line>
 30602;</nlm:aff>
</affiliation>
</author>
<author><name sortKey="Sun, Shulei" sort="Sun, Shulei" uniqKey="Sun S" first="Shulei" last="Sun">Shulei Sun</name>
<affiliation><nlm:aff id="aff6">Center for Research in Biological Systems,<institution>University of California, San Diego</institution>
, La Jolla,<addr-line>CA</addr-line>
 92093</nlm:aff>
</affiliation>
</author>
<author><name sortKey="Medeiros, Patricia M" sort="Medeiros, Patricia M" uniqKey="Medeiros P" first="Patricia M." last="Medeiros">Patricia M. Medeiros</name>
<affiliation><nlm:aff id="aff2">Marine Sciences,<institution>University of Georgia</institution>
, Athens,<addr-line>GA</addr-line>
 30602;</nlm:aff>
</affiliation>
</author>
<author><name sortKey="Paul, John H" sort="Paul, John H" uniqKey="Paul J" first="John H." last="Paul">John H. Paul</name>
<affiliation><nlm:aff id="aff4">College of Marine Science,<institution>University of South Florida</institution>
, St. Petersburg,<addr-line>FL</addr-line>
 33701;</nlm:aff>
</affiliation>
</author>
<author><name sortKey="Coles, Victoria J" sort="Coles, Victoria J" uniqKey="Coles V" first="Victoria J." last="Coles">Victoria J. Coles</name>
<affiliation wicri:level="2"><nlm:aff wicri:cut="; and" id="aff5">Horn Point Laboratory,<institution>University of Maryland Center for Environmental Science</institution>
, Cambridge, MD 21613</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<placeName><region type="state">Maryland</region>
</placeName>
<wicri:cityArea>, Cambridge</wicri:cityArea>
</affiliation>
</author>
<author><name sortKey="Yager, Patricia L" sort="Yager, Patricia L" uniqKey="Yager P" first="Patricia L." last="Yager">Patricia L. Yager</name>
<affiliation><nlm:aff id="aff2">Marine Sciences,<institution>University of Georgia</institution>
, Athens,<addr-line>GA</addr-line>
 30602;</nlm:aff>
</affiliation>
</author>
<author><name sortKey="Moran, Mary Ann" sort="Moran, Mary Ann" uniqKey="Moran M" first="Mary Ann" last="Moran">Mary Ann Moran</name>
<affiliation><nlm:aff id="aff2">Marine Sciences,<institution>University of Georgia</institution>
, Athens,<addr-line>GA</addr-line>
 30602;</nlm:aff>
</affiliation>
</author>
</analytic>
<series><title level="j">Proceedings of the National Academy of Sciences of the United States of America</title>
<idno type="ISSN">0027-8424</idno>
<idno type="eISSN">1091-6490</idno>
<imprint><date when="2014">2014</date>
</imprint>
</series>
</biblStruct>
</sourceDesc>
</fileDesc>
<profileDesc><textClass></textClass>
</profileDesc>
</teiHeader>
<front><div type="abstract" xml:lang="en"><title>Significance</title>
<p>The microbial community of the Amazon River Plume determines the fate of the world’s largest input of terrestrial carbon and nutrients to the ocean. By benchmarking with internal standards during sample collection, we determined that each liter of plume seawater contains 1 trillion genes and 50 billion transcripts from thousands of bacterial, archaeal, and eukaryotic taxa. Gene regulation by taxa inhabiting distinct microenvironments provides insights into micron-scale patterns of transformations in the marine carbon, nitrogen, phosphorus, and sulfur cycles in this globally important ecosystem.</p>
</div>
</front>
</TEI>
<affiliations><list><country><li>États-Unis</li>
</country>
<region><li>Maryland</li>
</region>
</list>
<tree><noCountry><name sortKey="Crump, Byron C" sort="Crump, Byron C" uniqKey="Crump B" first="Byron C." last="Crump">Byron C. Crump</name>
<name sortKey="Medeiros, Patricia M" sort="Medeiros, Patricia M" uniqKey="Medeiros P" first="Patricia M." last="Medeiros">Patricia M. Medeiros</name>
<name sortKey="Meng, Jun" sort="Meng, Jun" uniqKey="Meng J" first="Jun" last="Meng">Jun Meng</name>
<name sortKey="Moran, Mary Ann" sort="Moran, Mary Ann" uniqKey="Moran M" first="Mary Ann" last="Moran">Mary Ann Moran</name>
<name sortKey="Paul, John H" sort="Paul, John H" uniqKey="Paul J" first="John H." last="Paul">John H. Paul</name>
<name sortKey="Satinsky, Brandon M" sort="Satinsky, Brandon M" uniqKey="Satinsky B" first="Brandon M." last="Satinsky">Brandon M. Satinsky</name>
<name sortKey="Sharma, Shalabh" sort="Sharma, Shalabh" uniqKey="Sharma S" first="Shalabh" last="Sharma">Shalabh Sharma</name>
<name sortKey="Smith, Christa B" sort="Smith, Christa B" uniqKey="Smith C" first="Christa B." last="Smith">Christa B. Smith</name>
<name sortKey="Sun, Shulei" sort="Sun, Shulei" uniqKey="Sun S" first="Shulei" last="Sun">Shulei Sun</name>
<name sortKey="Yager, Patricia L" sort="Yager, Patricia L" uniqKey="Yager P" first="Patricia L." last="Yager">Patricia L. Yager</name>
<name sortKey="Zielinski, Brian L" sort="Zielinski, Brian L" uniqKey="Zielinski B" first="Brian L." last="Zielinski">Brian L. Zielinski</name>
</noCountry>
<country name="États-Unis"><region name="Maryland"><name sortKey="Doherty, Mary" sort="Doherty, Mary" uniqKey="Doherty M" first="Mary" last="Doherty">Mary Doherty</name>
</region>
<name sortKey="Coles, Victoria J" sort="Coles, Victoria J" uniqKey="Coles V" first="Victoria J." last="Coles">Victoria J. Coles</name>
</country>
</tree>
</affiliations>
</record>

Pour manipuler ce document sous Unix (Dilib)

EXPLOR_STEP=$WICRI_ROOT/Ticri/CIDE/explor/CyberinfraV1/Data/Main/Exploration

HfdSelect -h $EXPLOR_STEP/biblio.hfd -nk 000197 | SxmlIndent | more

HfdSelect -h $EXPLOR_AREA/Data/Main/Exploration/biblio.hfd -nk 000197 | SxmlIndent | more

Pour mettre un lien sur cette page dans le réseau Wicri

{{Explor lien
   |wiki=    Ticri/CIDE
   |area=    CyberinfraV1
   |flux=    Main
   |étape=   Exploration
   |type=    RBID
   |clé=     PMC:4121788
   |texte=   Microspatial gene expression patterns in the Amazon River Plume
}}

Pour générer des pages wiki

HfdIndexSelect -h $EXPLOR_AREA/Data/Main/Exploration/RBID.i   -Sk "pubmed:25024226" \
       | HfdSelect -Kh $EXPLOR_AREA/Data/Main/Exploration/biblio.hfd   \
       | NlmPubMed2Wicri -a CyberinfraV1

This area was generated with Dilib version V0.6.25.
Data generation: Thu Oct 27 09:30:58 2016. Site generation: Sun Mar 10 23:08:40 2024

Serveur d'exploration Cyberinfrastructure

Microspatial gene expression patterns in the Amazon River Plume

Microspatial gene expression patterns in the Amazon River Plume

Source :

Abstract

Links toward previous steps (curation, corpus...)

Le document en format XML

Pour manipuler ce document sous Unix (Dilib)

Pour mettre un lien sur cette page dans le réseau Wicri

Pour générer des pages wiki

	Serveur d'exploration Cyberinfrastructure
	Attention, ce site est en cours de développement ! Attention, site généré par des moyens informatiques à partir de corpus bruts. Les informations ne sont donc pas validées.